Stem-loop nta-MIR482d

Accession

MI0021466

Description

Nicotiana tabacum nta-MIR482d precursor miRNA

Literature search

1 open access papers mention nta-MIR482d
(4 sentences)

Sequence

118164 reads, 35035.0 reads per million, 39 experiments

gggagcuguuGGGGUGGGGGGCGUGGGAAGAUGucaucuuuacuuuuccugcgaaggagauuggcaucUUCCCGACUCCCCCCAUACCACUGGcuuccaa
((((((((.(((.((((((((.((((((((((((((((((..((((......)))))))).)))))))))))).)).)))))))).))).))))))))..

Structure

--        u   G        C  -            -    ua    uc 
  gggagcug uGG GUGGGGGG GU GGGAAGAUGuca ucuu  cuuu  c
  |||||||| ||| |||||||| || |||||||||||| ||||  ||||   
  ccuucGGU ACC UACCCCCC CA CCCUUcuacggu agag  gaag  u
aa        C   A        U  G            u    --    cg 

Annotation confidence Medium

Genome context

Unknown

Mature nta-miR482d-5p

• Accession: MIMAT0058171
• Description: Nicotiana tabacum nta-miR482d-5p mature miRNA
• Sequence: 11 - GGGGUGGGGGGCGUGGGAAGAUG - 33
• Evidence: experimental ; unknown

Mature nta-miR482d-3p

• Accession: MIMAT0024776
• Description: Nicotiana tabacum nta-miR482d-3p mature miRNA
• Sequence: 69 - UUCCCGACUCCCCCCAUACCACUGG - 93
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22353177
   Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
   Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
   BMC Plant Biol (2012) 12:28