miRBase entry: nta-MIR6162

Stem-loop nta-MIR6162


Accession
MI0021467
Description
Nicotiana tabacum nta-MIR6162 precursor miRNA


Sequence

5762 reads, 440.0 reads per million, 41 experiments
gauaaauauuAGAAAAAUGGUAGCCAUUGGAuuaaaguuuugaucCAAGGGCUUCCAUUUUUCUGAUuuuuaauag
..((((.(((((((((((((.((((.(((((((((....))))))))).)))).))))))))))))).))))....

Structure
--ga    u             U    A         a 
    uaaa auuAGAAAAAUGG AGCC UUGGAuuaa g
    |||| ||||||||||||| |||| |||||||||  
    auuu UAGUCUUUUUACC UCGG AACcuaguu u
gaua    u             U    G         u 


Annotation confidence Medium
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature nta-miR6162-5p

Accession MIMAT0024777
Description Nicotiana tabacum nta-miR6162-5p mature miRNA
Sequence 11 - AGAAAAAUGGUAGCCAUUGGA - 31
Evidence experimental
Illumina [1]

Mature nta-miR6162-3p

Accession MIMAT0058172
Description Nicotiana tabacum nta-miR6162-3p mature miRNA
Sequence 46 - CAAGGGCUUCCAUUUUUCUGAU - 67
Evidence experimental
unknown

References

  1. PubMed ID: 22353177
    Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
    Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
    BMC Plant Biol (2012) 12:28