miRBase entry: nta-MIR6161c

Stem-loop nta-MIR6161c


Accession
MI0021468
Description
Nicotiana tabacum nta-MIR6161c precursor miRNA


Sequence

23769 reads, 2073.0 reads per million, 43 experiments
cauccagcauAAUAUACUGGAGUUCGGUGCACCUauguAUGAACUUCCAGCAUAUUAUGcuggaccgg
..(((((((((((((.((((((((((.((((....))))))))).))))).)))))))))))))....

Structure
--ca             A     -     G    C 
    uccagcauAAUAU CUGGA GUUCG UGCA C
    ||||||||||||| ||||| ||||| ||||  
    aggucGUAUUAUA GACCU CAAGU Augu U
ggcc             C     U     -    a 


Annotation confidence Medium
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature nta-miR6161c-5p

Accession MIMAT0024778
Description Nicotiana tabacum nta-miR6161c-5p mature miRNA
Sequence 11 - AAUAUACUGGAGUUCGGUGCACCU - 34
Evidence experimental
Illumina [1]

Mature nta-miR6161c-3p

Accession MIMAT0058173
Description Nicotiana tabacum nta-miR6161c-3p mature miRNA
Sequence 39 - AUGAACUUCCAGCAUAUUAUG - 59
Evidence experimental
unknown

References

  1. PubMed ID: 22353177
    Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
    Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
    BMC Plant Biol (2012) 12:28