Stem-loop hvu-MIR6177

Accession

MI0021490

Description

Hordeum vulgare hvu-MIR6177 precursor miRNA

Sequence

cucguucauaUACCAUGGACAGAAGGCACUUAagaagaaaauggagauaggcaaguacagaugaaaccuggaccacaccuaacauuuuccaaguuuuguggcuuguaaggagguggaucccguguaugcgcuacaaagacgacgagaugccgaaggccaugaaaagugaugauaguucacauuaguugaugaaaacuuguaaaaaaggaaaacagaauaggcugggucuugggggcaagugcuuucauguccauggguagagauuaguugaauggc
.(((((((..(((((((((((((((((((((..........((((((((((...((.(((.......))).))....))))....))))))..(((((((((.((((....((......))...)))).))))))))).......(.(.((.((((((.......((((.......))))...((((......))))...............(((......))))))))).)).)))))))))))).)))))))))........))..))))))).

Structure

c       ua  --------         -          ---------------------------------------------------------------------------------------------------------------------------------------Aagaagaaaa      ----    -caa  a   au 
 ucguuca  UA        CCAUGGACA GAAGGCACUU                                                                                                                                                 uggaga    uagg    gu cag  g
 |||||||  ||        ||||||||| ||||||||||                                                                                                                                                 ||||||    ||||    || |||  a
 gguaagu  au        gguaccugu cuuucgugaa                                                                                                                                                 accuuu    aucc    ca guc  a
c       ug  uagagaug         a          cggggguucugggucggauaagacaaaaggaaaaaauguucaaaaguaguugauuacacuugauaguagugaaaaguaccggaagccguagagcagcagaaacaucgcguaugugcccuagguggaggaauguucgguguuuuga      uaca    acac  g   ca 

Annotation confidence Not enough data

Genome context

Unknown

Mature hvu-miR6177

• Accession: MIMAT0024800
• Description: Hordeum vulgare hvu-miR6177 mature miRNA
• Sequence: 11 - UACCAUGGACAGAAGGCACUUA - 32
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22489137
   Identification and characterization of microRNAs from barley (Hordeum vulgare L.) by high-throughput sequencing
   Lv S, Nie X, Wang L, Du X, Biradar SS, Jia X, Weining S
   Int J Mol Sci (2012) 13:2973-2984