Dead hairpin entry

Stem-loop osa-MIR1440b

Accession

MI0021593

Description

Oryza sativa osa-MIR1440b precursor miRNA

Comment

The pattern of deep sequencing reads mapping to this locus does not support its annotation as a microRNA.

Literature search

4 open access papers mention osa-MIR1440b
(9 sentences)

Sequence

18242 reads, 70.0 reads per million, 142 experiments

aaaugccagugcucaaauaccacucucccaaauuuucauuaccaaauaccaucCGGGCCCACAUGUCAGCCUCACUuuccauucaaacaaaagugaugugggacccugugcuggaugaGGCUGACAUGUGGGCCCGGGUGGuauuugggaauggaaauuuaggagagugguauuugagcauuggcauu
.(((((((((((((((((((((((((((.((((((((((..(((((((((((((((((((((((((((((((((..(((((((((........))).)))))).((......)).)))))))))))))))))))))))))))))))))..)))))))))).)))))))))))))))))))))))))))

Structure

a                           c          ua                                 ----------CU      -   aac 
 aaugccagugcucaaauaccacucucc aaauuuucau  ccaaauaccaucCGGGCCCACAUGUCAGCCUCA            uuccau uca   a
 ||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||||||||||            |||||| |||    
 uuacgguuacgaguuuauggugagagg uuuaaaggua  gguuuauGGUGGGCCCGGGUGUACAGUCGGagu            agggug agu   a
-                           a          ag                                 aggucguguccc      u   gaa