Stem-loop osa-MIR1440b

Accession

MI0021593

Description

Oryza sativa osa-MIR1440b precursor miRNA

Literature search

4 open access papers mention osa-MIR1440b
(9 sentences)

Sequence

18242 reads, 70.0 reads per million, 142 experiments

aaaugccagugcucaaauaccacucucccaaauuuucauuaccaaauaccaucCGGGCCCACAUGUCAGCCUCACUuuccauucaaacaaaagugaugugggacccugugcuggaugaGGCUGACAUGUGGGCCCGGGUGGuauuugggaauggaaauuuaggagagugguauuugagcauuggcauu
.(((((((((((((((((((((((((((.((((((((((..(((((((((((((((((((((((((((((((((..(((((((((........))).)))))).((......)).)))))))))))))))))))))))))))))))))..)))))))))).)))))))))))))))))))))))))))

Structure

a                           c          ua                                 ----------CU      -   aac 
 aaugccagugcucaaauaccacucucc aaauuuucau  ccaaauaccaucCGGGCCCACAUGUCAGCCUCA            uuccau uca   a
 ||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||||||||||            |||||| |||    
 uuacgguuacgaguuuauggugagagg uuuaaaggua  gguuuauGGUGGGCCCGGGUGUACAGUCGGagu            agggug agu   a
-                           a          ag                                 aggucguguccc      u   gaa 

Annotation confidence Low

Genome context

9: 5980506-5980693 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from osa-MIR1440b

Mature osa-miR1440b-5p

• Accession: MIMAT0056312
• Description: Oryza sativa osa-miR1440b-5p mature miRNA
• Sequence: 54 - CGGGCCCACAUGUCAGCCUCACU - 76
• Evidence: experimental ; unknown

Mature osa-miR1440b-3p

• Accession: MIMAT0024866
• Description: Oryza sativa osa-miR1440b-3p mature miRNA
• Sequence: 119 - GGCUGACAUGUGGGCCCGGGUGG - 141
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22585409
   Novel miRNAs in the control of arsenite levels in rice
   "Liu Q"
   "Funct Integr Genomics (2012) 12:649-658