Stem-loop osa-MIR6248

Accession

MI0021596

Description

Oryza sativa osa-MIR6248 precursor miRNA

Literature search

2 open access papers mention osa-MIR6248
(6 sentences)

Sequence

2612 reads, 14.0 reads per million, 136 experiments

gauaaaaugcuacuaccucuauccCCAAAUAUAAGGGACUUUGCCUauguaauuacauaggcaaaauccuuaUAUUUGAGGAUGGAGGUAGUAucagcuuagg
..(((..((.((((((((((((((.((((((((((((..(((((((((((....))))))))))).)))))))))))).)))))))))))))).))..)))..

Structure

ga   aa  c              C            AC           a 
  uaa  ug uacuaccucuaucc CAAAUAUAAGGG  UUUGCCUaugu a
  |||  || |||||||||||||| ||||||||||||  |||||||||||  
  auu  ac AUGAUGGAGGUAGG GUUUAUauuccu  aaacggauaca u
gg   cg  u              A            -a           u 

Annotation confidence Low

Genome context

3: 32572985-32573087 [-]

Mature osa-miR6248-5p

• Accession: MIMAT0056315
• Description: Oryza sativa osa-miR6248-5p mature miRNA
• Sequence: 25 - CCAAAUAUAAGGGACUUUGCCU - 46
• Evidence: experimental ; unknown

Mature osa-miR6248-3p

• Accession: MIMAT0024869
• Description: Oryza sativa osa-miR6248-3p mature miRNA
• Sequence: 73 - UAUUUGAGGAUGGAGGUAGUA - 93
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22585409
   Novel miRNAs in the control of arsenite levels in rice
   "Liu Q"
   "Funct Integr Genomics (2012) 12:649-658