Stem-loop osa-MIR5337b

Accession

MI0021597

Description

Oryza sativa osa-MIR5337b precursor miRNA

Literature search

1 open access papers mention osa-MIR5337b
(1 sentences)

Sequence

14928 reads, 61.0 reads per million, 135 experiments

ccuccauuucAAAUUACUUGUCGUUCUAGCUUUGccacuagucaaacauuucuauuuuucaccauccauuuuuggaaauucguguagguuaacaugcaauauauauuauggaaguauuucucauggugaaucuaaaaacauaaaccuuaugauguuaaacuauaugaauuucuacaaguugauguucauauaaacauuugauuuaggacaAAGCUAGAACGGCAAGCAAUUUGAaaugagggga
(((((((((((((((.((((((((((((((((((((...(((((((..(((.(((.......((((.((((.(((((((((((((((..((((((........((((((((((....))).)))))))..........(((((...)))))))))))..))))))))))))))).)))).))))...))).)))..)))))))..)).)))))))))))))))))).))))))))))).)))).

Structure

-    -           A                  -  acu       ca   c   uuuucac    c    u               gu      ---------------gcaauaua       -   g 
 ccuc cauuucAAAUU CUUGUCGUUCUAGCUUUG cc   agucaaa  uuu uau       cauc auuu uggaaauucguguag  uaacau                       uauuaug gaa u
 |||| ||||||||||| |||||||||||||||||| ||   |||||||  ||| |||       |||| |||| |||||||||||||||  ||||||                       ||||||| |||  
 gggg guaaAGUUUAA GAACGGCAAGAUCGAAac gg   uuaguuu  aaa aua       guag ugaa aucuuuaaguauauc  auugua                       gugguac cuu a
a    a           C                  a  -au       ac   u   ----cuu    u    c               aa      guauuccaaauacaaaaaucuaa       u   u 

Annotation confidence Medium

Genome context

3: 35885481-35885724 [-]

Mature osa-miR5337b-5p

• Accession: MIMAT0056316
• Description: Oryza sativa osa-miR5337b-5p mature miRNA
• Sequence: 11 - AAAUUACUUGUCGUUCUAGCUUUG - 34
• Evidence: experimental ; unknown

Mature osa-miR5337b-3p

• Accession: MIMAT0024870
• Description: Oryza sativa osa-miR5337b-3p mature miRNA
• Sequence: 211 - AAGCUAGAACGGCAAGCAAUUUGA - 234
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22585409
   Novel miRNAs in the control of arsenite levels in rice
   "Liu Q"
   "Funct Integr Genomics (2012) 12:649-658