Stem-loop osa-MIR5512b

Accession

MI0021599

Description

Oryza sativa osa-MIR5512b precursor miRNA

Literature search

1 open access papers mention osa-MIR5512b
(2 sentences)

Sequence

7988 reads, 34.0 reads per million, 138 experiments

auguauuuuuuuagcauuaccauauccuauUUGGCAAUGAAUUUCACUUUagacaauccaaucuuaagaacauacucuaguauaugaaauucauugccaaaUAGGAUAUGGUAAUGCUAAAAaaaaauacaa
.(((((((((((((((((((((((((((((((((((((((((((((..(((((......................)))))....)))))))))))))))))))))))))))))))))))..)))))))))).

Structure

a          --                                   --CU     caauccaauc 
 uguauuuuuu  uagcauuaccauauccuauUUGGCAAUGAAUUUCA    UUaga          u
 ||||||||||  |||||||||||||||||||||||||||||||||||    |||||           
 acauaaaaaA  AUCGUAAUGGUAUAGGAUaaaccguuacuuaaagu    gaucu          u
a          AA                                   auau     cauacaagaa 

Annotation confidence Low

Genome context

4: 18386979-18387110 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from osa-MIR5512b

Mature osa-miR5512b-5p

• Accession: MIMAT0056318
• Description: Oryza sativa osa-miR5512b-5p mature miRNA
• Sequence: 31 - UUGGCAAUGAAUUUCACUUU - 50
• Evidence: experimental ; unknown

Mature osa-miR5512b-3p

• Accession: MIMAT0024872
• Description: Oryza sativa osa-miR5512b-3p mature miRNA
• Sequence: 102 - UAGGAUAUGGUAAUGCUAAAA - 122
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22585409
   Novel miRNAs in the control of arsenite levels in rice
   "Liu Q"
   "Funct Integr Genomics (2012) 12:649-658