Stem-loop osa-MIR6250

Accession

MI0021600

Description

Oryza sativa osa-MIR6250 precursor miRNA

Literature search

4 open access papers mention osa-MIR6250
(14 sentences)

Sequence

32376 reads, 164.0 reads per million, 142 experiments

uguuuuuuuucuuuuugguugaaUCGUCCUCUCUUGUUCUUGUUAaggugggggcaccaauauaucaccauggugccagccaucucugcgagaaGGGGAUAGAUCGACGCGUCAAGaaaucguuuc
.......((((((..(((((((.(((((((((.....((((((..((((((.(((((((...........)))))))..))))))..))))))))))))).))))))).))..)))))).......

Structure

uguuuuu      uu  -     a  -       CUUGU      UA      -g       auau 
       uuucuu  ug guuga UC GUCCUCU     UCUUGU  aggugg  ggcacca    a
       ||||||  || ||||| || |||||||     ||||||  ||||||  |||||||    u
       aaaGAA  GC CAGCU AG UAGGGGa     agagcg  ucuacc  ccguggu    c
cuuugcu      CU  G     -  A       -----      uc      ga       acca 

Annotation confidence Low

Genome context

6: 28264615-28264740 [+]

Mature osa-miR6250-5p

• Accession: MIMAT0056319
• Description: Oryza sativa osa-miR6250-5p mature miRNA
• Sequence: 24 - UCGUCCUCUCUUGUUCUUGUUA - 45
• Evidence: experimental ; unknown

Mature osa-miR6250-3p

• Accession: MIMAT0024873
• Description: Oryza sativa osa-miR6250-3p mature miRNA
• Sequence: 95 - GGGGAUAGAUCGACGCGUCAAG - 116
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22585409
   Novel miRNAs in the control of arsenite levels in rice
   "Liu Q"
   "Funct Integr Genomics (2012) 12:649-658