Stem-loop osa-MIR6253

Accession

MI0021603

Description

Oryza sativa osa-MIR6253 precursor miRNA

Literature search

5 open access papers mention osa-MIR6253
(7 sentences)

Sequence

2438 reads, 17.0 reads per million, 136 experiments

auaucaauuaGAGGAAAGUGGGCAGUUGGGUUaagcuuauucuguuuucuccaacAAUCAUUUUCCUCUCAUUagaccu
...(((((.((((((((((((...((((((..((((.......))))..))))))..)))))))))))).))).))...

Structure

aua  -   u            GCA      UU    uu 
   uc aau aGAGGAAAGUGG   GUUGGG  aagc  a
   || ||| ||||||||||||   ||||||  ||||  u
   ag UUA UCUCCUUUUACU   caaccu  uuug  u
ucc  a   C            -AA      cu    uc 

Annotation confidence Low

Genome context

7: 25019014-25019092 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from osa-MIR6253

Mature osa-miR6253-5p

• Accession: MIMAT0024876
• Description: Oryza sativa osa-miR6253-5p mature miRNA
• Sequence: 11 - GAGGAAAGUGGGCAGUUGGGUU - 32
• Evidence: experimental ; Illumina [1]

Mature osa-miR6253-3p

• Accession: MIMAT0056322
• Description: Oryza sativa osa-miR6253-3p mature miRNA
• Sequence: 56 - AAUCAUUUUCCUCUCAUU - 73
• Evidence: experimental ; unknown

References

1. PubMed ID: 22585409
   Novel miRNAs in the control of arsenite levels in rice
   "Liu Q"
   "Funct Integr Genomics (2012) 12:649-658