Stem-loop ppe-MIR169e

Accession

MI0021629

Description

Prunus persica ppe-MIR169e precursor miRNA

Literature search

7 open access papers mention ppe-MIR169e
(20 sentences)

Sequence

gagucuugcaugaggagauggagaguagauaUGAGCCAAGGAUGACUUGCCAaagcauauggccuuuccacuuguuuaucuucuggcaagcuguccuugguucacguuugcucucuuuucucucaugugagauuca
((((((((((((((((((.(((((((((((.(((((((((((((.((((((((((((..(((.....)))..)))))......))))))).))))))))))))).))))))))))))))).)))))))))))))).

Structure

-              -    u           a             A       ------     ua   c 
 gagucuugcaugag gaga ggagaguagau UGAGCCAAGGAUG CUUGCCA      aagca  ugg c
 |||||||||||||| |||| ||||||||||| ||||||||||||| |||||||      |||||  ||| u
 cuuagaguguacuc cuuu ucucucguuug acuugguuccugu gaacggu      uuugu  acc u
a              u    -           c             c       cuucua     uc   u 

Annotation confidence Not enough data

Comments

Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context

chrG1: 5644236-5644371 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ppe-MIR169e

Mature ppe-miR169e-5p

• Accession: MIMAT0031172
• Description: Prunus persica ppe-miR169e-5p mature miRNA
• Sequence: 32 - UGAGCCAAGGAUGACUUGCCA - 52
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 22863067
   High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
   Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
   BMC Genomics (2012) 13:371


2. PubMed ID: 22909020
   Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
   Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
   BMC Plant Biol (2012) 12:149