Accession
MI0021629
Description
Prunus persica
ppe-MIR169e precursor miRNA
Literature search
7 open access papers mention ppe-MIR169e
(22 sentences)
(22 sentences)
Sequence
3493
reads,
203.0
reads per million, 20 experiments
gagucuugcaUGAGGAGAUGGAGAGUAGAUAUgagccaaggaugacuugccaaagcauauggccuuuccacuuguuuaucuucuggcaagcuguccuugguucacgUUUGCUCUCUUUUCUCUCAUGugagauuca
((((((((((((((((((.(((((((((((.(((((((((((((.((((((((((((..(((.....)))..)))))......))))))).))))))))))))).))))))))))))))).)))))))))))))).
((((((((((((((((((.(((((((((((.(((((((((((((.((((((((((((..(((.....)))..)))))......))))))).))))))))))))).))))))))))))))).)))))))))))))).
Structure
- - U A a ------ ua c gagucuugcaUGAG GAGA GGAGAGUAGAU Ugagccaaggaug cuugcca aagca ugg c |||||||||||||| |||| ||||||||||| ||||||||||||| ||||||| ||||| ||| u cuuagaguGUACUC CUUU UCUCUCGUUUg acuugguuccugu gaacggu uuugu acc u a U - c c cuucua uc u
Annotation confidence
High
Do you think this miRNA is real?
Comments
Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.
Genome context
chrG1: 5644236-5644371 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from ppe-MIR169e
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ppe-miR169e-5p
| Accession | MIMAT0031172 |
| Description | Prunus persica ppe-miR169e-5p mature miRNA |
| Sequence | 11 - UGAGGAGAUGGAGAGUAGAUAU - 32 |
| Evidence |
experimental
Illumina [2] |
Mature ppe-miR169e-3p
| Accession | MIMAT0058473 |
| Description | Prunus persica ppe-miR169e-3p mature miRNA |
| Sequence | 107 - UUUGCUCUCUUUUCUCUCAUG - 127 |
| Evidence |
experimental
unknown |
References
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