miRBase entry: ppe-MIR6274a

Stem-loop ppe-MIR6274a

Accession

MI0021638

Description

Prunus persica ppe-MIR6274a precursor miRNA

Sequence

gagauaguauUAUUUUGCUAUCUUCGGGCAAUAacacaauaauauguaaaaaaauuaucuuauaugucauugcguuauugaucgaaaauagcaaaaaguuauauauucccguugcaugagaauuucucu
((((((..(((.(((((((((.((((..(((((((.((((.((((((((..........)))))))).)))).)))))))..)))).))))))))))))..))).))).........((((...)))).

Structure

---------------------   -   gu   A         C    GG       a    a        aaaa 
                     gag aua  auU UUUUGCUAU UUCG  CAAUAac caau auauguaa    a
                     ||| |||  ||| ||||||||| ||||  ||||||| |||| ||||||||     
                     cuu uau  uga aaaacgaua aagc  guuauug guua uguauauu    u
ucucuuuaagaguacguugcc   a   au   -         a    ua       c    c        cuau

Annotation confidence Not enough data

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Comments

Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context

chrG5: 3414958-3415086 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ppe-MIR6274a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppe-miR6274a

Accession	MIMAT0027301
Description	Prunus persica ppe-miR6274a mature miRNA
Sequence	11 - UAUUUUGCUAUCUUCGGGCAAUA - 33
Evidence	experimental Illumina [1]

References

PubMed ID: 22863067
High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
BMC Genomics (2012) 13:371