Stem-loop hme-mir-1175

Accession

MI0021730

Description

Heliconius melpomene hme-mir-1175 precursor miRNA

Literature search

1 open access papers mention hme-mir-1175
(1 sentences)

Sequence

ccgcguccuaaugauauauuaagcguugaggauuAAGUGGAGGUGUGAUCUCUUCAcuuuuucaauuuaaagugagauucaacuccuccaacuuaacccgagccgcaaguacuacugacgugg
(((((((...............(((.(..((.(((((((((((.((((..(((.((((((........))))))))).)).)).))))).)))))).))..).))).(((...))))))))))

Structure

       cuaaugauauauuaa   u ga  a      -     U  -  UC   U      uuc 
ccgcguc               gcg u  gg uuAAGU GGAGG GU GA  UCU CAcuuu   a
|||||||               ||| |  || |||||| ||||| || ||  ||| ||||||    
ggugcag               cgc g  cc aauuca ccucc ca cu  aga gugaaa   a
       -----ucaucaugaa   c ag  c      a     u  a  -u   -      uuu 

Annotation confidence Not enough data

Genome context

HE669540: 33160-33282 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from hme-mir-1175

Mature hme-miR-1175-5p

• Accession: MIMAT0024935
• Description: Heliconius melpomene hme-miR-1175-5p mature miRNA
• Sequence: 35 - AAGUGGAGGUGUGAUCUCUUCA - 56
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22722851
   Butterfly genome reveals promiscuous exchange of mimicry adaptations among species
   "The Heliconius Genome Consortium"
   "Nature (2012) 487:94-98