Stem-loop sma-mir-3479

Accession

MI0021826

Description

Schistosoma mansoni sma-mir-3479 precursor miRNA

Literature search

7 open access papers mention sma-mir-3479
(27 sentences)

Sequence

12321 reads, 1692.0 reads per million, 31 experiments

cauguuugugAGGGGGAUGUUUGUGCAAUUUaguguuguaaauaUAUUGCACUAACCUUCGCCUUGcaaauauagg
.((((((((((((.(((.(((.(((((((...(((((...)))))))))))).))).))).))))))))))))...

Structure

--c            G   U   U       UUa     g 
   auguuugugAGG GGA GUU GUGCAAU   guguu  
   |||||||||||| ||| ||| |||||||   ||||| u
   uauaaacGUUCC CUU CAA CACGUUA   Uauaa  
gga            G   C   U       ---     a 

Annotation confidence High

Genome context

4: 8894048-8894123 [-]

Mature sma-miR-3479-5p

• Accession: MIMAT0053618
• Description: Schistosoma mansoni sma-miR-3479-5p mature miRNA
• Sequence: 11 - AGGGGGAUGUUUGUGCAAUUU - 31
• Evidence: not_experimental

Mature sma-miR-3479-3p

• Accession: MIMAT0025039
• Description: Schistosoma mansoni sma-miR-3479-3p mature miRNA
• Sequence: 45 - UAUUGCACUAACCUUCGCCUUG - 66
• Evidence: not_experimental

References

1. PubMed ID: 21640815
   Genome-wide identification of novel microRNAs and their target genes in the human parasite Schistosoma mansoni
   "de Souza Gomes M, Muniyappa MK, Carvalho SG, Guerra-Sa R, Spillane C"
   "Genomics (2011) 98:96-111