Stem-loop rno-mir-3099

Accession

MI0021833

Description

Rattus norvegicus rno-mir-3099 precursor miRNA

Sequence

57752 reads, 46.0 reads per million, 202 experiments

aaaccucaagccugcugagcgaucgauccccaucCCAGCUUCCUUCCAGCCCUUGauguuucaguaugcacaUAGGCUAGAAAGAGGUUGGGGAuggggaaagaugagagcaucggaugcaggauugag
....(((((.((((((((((..(((.((((((((((((((((.(((.((((..((.(((........)))))..)))).))).)))))).))))))))))....)))..)).)))...))))).)))))

Structure

aaac     g     ---   -  ga   ---a          -      C   C    CU  a   uuc 
    cucaa ccugc   uga gc  ucg    uccccaucCC AGCUUC UUC AGCC  UG ugu   a
    ||||| |||||   ||| ||  |||    |||||||||| |||||| ||| ||||  || |||    
    gaguu ggacg   gcu cg  agu    agggguAGGG UUGGAG AAG UCGG  ac acg   g
----     a     uag   a  ag   agaa          G      A   A    AU  -   uau 

Annotation confidence Medium

Genome context

chr1: 70136945-70137073 [-]

Mature rno-miR-3099-5p

• Accession: MIMAT0052037
• Description: Rattus norvegicus rno-miR-3099-5p mature miRNA
• Sequence: 35 - CCAGCUUCCUUCCAGCCCUUG - 55
• Evidence: experimental ; Illumina [1]

Mature rno-miR-3099-3p

• Accession: MIMAT0025048
• Description: Rattus norvegicus rno-miR-3099-3p mature miRNA
• Sequence: 73 - UAGGCUAGAAAGAGGUUGGGGA - 94
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22605339
   Limonoid compounds inhibit sphingomyelin biosynthesis by preventing CERT protein-dependent extraction of ceramides from the endoplasmic reticulum
   "Hullin-Matsuda F, Tomishige N, Sakai S, Ishitsuka R, Ishii K, Makino A, Greimel P, Abe M, Laviad EL, Lagarde M, Vidal H, Saito T, Osada H, Hanada K, Futerman AH, Kobayashi T"
   "J Biol Chem (2012) 287:24397-24411


2. PubMed ID: 22908386
   MicroRNAs in the pineal gland: miR-483 regulates melatonin synthesis by targeting arylalkylamine N-acetyltransferase
   "Clokie SJ, Lau P, Kim HH, Coon SL, Klein DC"
   "J Biol Chem (2012) 287:25312-25324