Stem-loop rno-mir-6315

Accession

MI0021835

Description

Rattus norvegicus rno-mir-6315 precursor miRNA

Sequence

2195 reads, 3.0 reads per million, 347 experiments

caccaagcuagcagguaggcUCUGGACAGGACAGGCCCUGAGCcagccaccgagcucugcagcUCACGUGCCCUUCCUGUCCUCUagggguccaugcacua
..........(((....((((((((((((((..((((.(((((.(((......))).....))))).).)))..))))))))....))))))..)))....

Structure

caccaagcua   ggua      ----        CA   - C     ----c   ca 
          gca    ggcUCU    GGACAGGA  GGC C UGAGC     agc  c
          |||    ||||||    ||||||||  ||| | |||||     |||   
          cgu    cugggg    CCUGUCCU  CCG G ACUcg     ucg  c
------auca   --ac      aUCU        UC   U C     acguc   ag 

Annotation confidence Medium

Genome context

chr1: 221433993-221434093 [-]

Mature rno-miR-6315-5p

• Accession: MIMAT0025050
• Description: Rattus norvegicus rno-miR-6315-5p mature miRNA
• Sequence: 21 - UCUGGACAGGACAGGCCCUGAGC - 43
• Evidence: experimental ; Illumina [1]

Mature rno-miR-6315-3p

• Accession: MIMAT0052039
• Description: Rattus norvegicus rno-miR-6315-3p mature miRNA
• Sequence: 64 - UCACGUGCCCUUCCUGUCCUCU - 85
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22605339
   Limonoid compounds inhibit sphingomyelin biosynthesis by preventing CERT protein-dependent extraction of ceramides from the endoplasmic reticulum
   "Hullin-Matsuda F, Tomishige N, Sakai S, Ishitsuka R, Ishii K, Makino A, Greimel P, Abe M, Laviad EL, Lagarde M, Vidal H, Saito T, Osada H, Hanada K, Futerman AH, Kobayashi T"
   "J Biol Chem (2012) 287:24397-24411


2. PubMed ID: 22908386
   MicroRNAs in the pineal gland: miR-483 regulates melatonin synthesis by targeting arylalkylamine N-acetyltransferase
   "Clokie SJ, Lau P, Kim HH, Coon SL, Klein DC"
   "J Biol Chem (2012) 287:25312-25324