Stem-loop rno-mir-3102

Accession

MI0021836

Description

Rattus norvegicus rno-mir-3102 precursor miRNA

Literature search

1 open access papers mention rno-mir-3102
(2 sentences)

Sequence

47408 reads, 56.0 reads per million, 456 experiments

cgcagcuccaugagccugugaguggccaggguggggcugGGUGGUGCAGGCAGGAGAGCCauugaucuauugcgggcucuacucccugccccagccaGAGCACCCCAUUGGCUACCCACAGguacacagcugccagu
.((((((...((.(((((((.(((((((..((((((((((.(((.(((((.((.((((((..............)))))).)).))))).))).))))....))))))))))))).))))))).)).))))))....

Structure

---c      cca  a       a       gg      ----    G   U     C  G      auugau 
    gcagcu   ug gccugug guggcca  gugggg    cugG UGG GCAGG AG AGAGCC      c
    ||||||   || ||||||| |||||||  ||||||    |||| ||| ||||| || ||||||       
    cgucga   ac ugGACAC CAUCGGU  UACCCC    Gacc acc cgucc uc ucucgg      u
ugac      --c  a       C       --      ACGA    g   c     c  a      gcguua 

Annotation confidence Low

Genome context

chr1: 165921184-165921320 [-]

Mature rno-miR-3102-5p

• Accession: MIMAT0061433
• Description: Rattus norvegicus rno-miR-3102-5p mature miRNA
• Sequence: 40 - GGUGGUGCAGGCAGGAGAGCC - 60
• Evidence: experimental ; Illumina [1]

Mature rno-miR-3102-3p

• Accession: MIMAT0025051
• Description: Rattus norvegicus rno-miR-3102-3p mature miRNA
• Sequence: 98 - GAGCACCCCAUUGGCUACCCACAG - 121
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22605339
   Limonoid compounds inhibit sphingomyelin biosynthesis by preventing CERT protein-dependent extraction of ceramides from the endoplasmic reticulum
   "Hullin-Matsuda F, Tomishige N, Sakai S, Ishitsuka R, Ishii K, Makino A, Greimel P, Abe M, Laviad EL, Lagarde M, Vidal H, Saito T, Osada H, Hanada K, Futerman AH, Kobayashi T"
   "J Biol Chem (2012) 287:24397-24411


2. PubMed ID: 22908386
   MicroRNAs in the pineal gland: miR-483 regulates melatonin synthesis by targeting arylalkylamine N-acetyltransferase
   "Clokie SJ, Lau P, Kim HH, Coon SL, Klein DC"
   "J Biol Chem (2012) 287:25312-25324