Stem-loop rno-mir-6316

Accession

MI0021838

Description

Rattus norvegicus rno-mir-6316 precursor miRNA

Literature search

1 open access papers mention rno-mir-6316
(1 sentences)

Sequence

40 reads, 1 reads per million, 17 experiments

acauccacaugucugucucuguggcacacaggugcaugcaugugugcucugacuuucaCAUGUCUGUCUCUGUGGCACACAgaugcaugcacgugcacaca
.....(((.(((.(((.((((((((.((((((.(((.(((((((............))))))).))).)))))))).)))))).))).))).)))......

Structure

-acauc   a   c   c      -  a      u   u       ugcuc 
      cac ugu ugu ucugug gc cacagg gca gcaugug     u
      ||| ||| ||| |||||| || |||||| ||| |||||||      
      gug acg acg agACAC CG GUGUCU UGU UGUACac     g
acacac   c   u   u      A  -      C   C       uuuca 

Annotation confidence Low

Genome context

chr1: 278298675-278298775 [+]

Mature rno-miR-6316

• Accession: MIMAT0025053
• Description: Rattus norvegicus rno-miR-6316 mature miRNA
• Sequence: 59 - CAUGUCUGUCUCUGUGGCACACA - 81
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22605339
   Limonoid compounds inhibit sphingomyelin biosynthesis by preventing CERT protein-dependent extraction of ceramides from the endoplasmic reticulum
   "Hullin-Matsuda F, Tomishige N, Sakai S, Ishitsuka R, Ishii K, Makino A, Greimel P, Abe M, Laviad EL, Lagarde M, Vidal H, Saito T, Osada H, Hanada K, Futerman AH, Kobayashi T"
   "J Biol Chem (2012) 287:24397-24411


2. PubMed ID: 22908386
   MicroRNAs in the pineal gland: miR-483 regulates melatonin synthesis by targeting arylalkylamine N-acetyltransferase
   "Clokie SJ, Lau P, Kim HH, Coon SL, Klein DC"
   "J Biol Chem (2012) 287:25312-25324