Stem-loop rno-mir-6318

Accession

MI0021840

Description

Rattus norvegicus rno-mir-6318 precursor miRNA

Literature search

1 open access papers mention rno-mir-6318
(1 sentences)

Sequence

5762 reads, 9.0 reads per million, 389 experiments

gagagaccggcggcggucagcaCUCAGGCCUGUGCCCAAGGACUccccgucugguucaaaggCUGCCUGGCGCAGGGCCUGUAGcugcucccgcugcuccuaaaguuaa
........((((((((..((((((((((((((((((..(((.....(.((((.......)))).)))))))))).)))))).)).)))).))))))))...........

Structure

---gagagacc        uc    -  -      -      CA   ACUcc c    gg 
           ggcggcgg  agca CU CAGGCC UGUGCC  AGG     c gucu  u
           ||||||||  |||| || |||||| ||||||  |||     | ||||  u
           ucgucgcc  ucgu GA GUCCGG ACGCGG  UCC     G Cgga  c
aauugaaaucc        -c    c  U      G      --   ----- U    aa 

Annotation confidence High

Genome context

chr19: 37262625-37262733 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from rno-mir-6318

Mature rno-miR-6318-5p

• Accession: MIMAT0052040
• Description: Rattus norvegicus rno-miR-6318-5p mature miRNA
• Sequence: 23 - CUCAGGCCUGUGCCCAAGGACU - 44
• Evidence: experimental ; Illumina [1]

Mature rno-miR-6318-3p

• Accession: MIMAT0025055
• Description: Rattus norvegicus rno-miR-6318-3p mature miRNA
• Sequence: 63 - CUGCCUGGCGCAGGGCCUGUAG - 84
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22605339
   Limonoid compounds inhibit sphingomyelin biosynthesis by preventing CERT protein-dependent extraction of ceramides from the endoplasmic reticulum
   "Hullin-Matsuda F, Tomishige N, Sakai S, Ishitsuka R, Ishii K, Makino A, Greimel P, Abe M, Laviad EL, Lagarde M, Vidal H, Saito T, Osada H, Hanada K, Futerman AH, Kobayashi T"
   "J Biol Chem (2012) 287:24397-24411


2. PubMed ID: 22908386
   MicroRNAs in the pineal gland: miR-483 regulates melatonin synthesis by targeting arylalkylamine N-acetyltransferase
   "Clokie SJ, Lau P, Kim HH, Coon SL, Klein DC"
   "J Biol Chem (2012) 287:25312-25324