Stem-loop rno-mir-6320

Accession

MI0021843

Description

Rattus norvegicus rno-mir-6320 precursor miRNA

Sequence

10 reads, 1 reads per million, 9 experiments

augcccguggcaucaggcccaagugcugagauuacaaggcaguuaaagccaggaugagaaagucgugcUGAACAUGCUUGUAAUCUCAGCAcuugggaggcuaaggcaggaggaucaagag
.((((..((((......(((((((((((((((((((((.(((((..(((.(.(((......))).)))).))).)))))))))))))))))))))))..)))).)))).............

Structure

------------a    cg    aucagg                     g  -   aa   c g   ga 
             ugcc  uggc      cccaagugcugagauuacaag ca guu  agc a gau  g
             ||||  ||||      ||||||||||||||||||||| || |||  ||| | |||   
             acgg  aucg      ggguucACGACUCUAAUGUUC GU CAA  Ucg u cug  a
gagaacuaggagg    -a    ----ga                     -  A   -G   - g   aa 

Annotation confidence Low

Genome context

chr15: 42959640-42959760 [-]

Mature rno-miR-6320

• Accession: MIMAT0025058
• Description: Rattus norvegicus rno-miR-6320 mature miRNA
• Sequence: 69 - UGAACAUGCUUGUAAUCUCAGCA - 91
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22605339
   Limonoid compounds inhibit sphingomyelin biosynthesis by preventing CERT protein-dependent extraction of ceramides from the endoplasmic reticulum
   "Hullin-Matsuda F, Tomishige N, Sakai S, Ishitsuka R, Ishii K, Makino A, Greimel P, Abe M, Laviad EL, Lagarde M, Vidal H, Saito T, Osada H, Hanada K, Futerman AH, Kobayashi T"
   "J Biol Chem (2012) 287:24397-24411


2. PubMed ID: 22908386
   MicroRNAs in the pineal gland: miR-483 regulates melatonin synthesis by targeting arylalkylamine N-acetyltransferase
   "Clokie SJ, Lau P, Kim HH, Coon SL, Klein DC"
   "J Biol Chem (2012) 287:25312-25324