Stem-loop rno-mir-1298

Accession

MI0021845

Description

Rattus norvegicus rno-mir-1298 precursor miRNA

Literature search

7 open access papers mention rno-mir-1298
(21 sentences)

Sequence

121944 reads, 306.0 reads per million, 239 experiments

ggcaaacugaagaaguguuggagagaugagggguuaagagUUCAUUCGGCUGUCCAGAUGUAuccaaguacccuguuauuuggcaauaaauaCAUCUGGGCAACUGAUUGAACUUuucgcuucucuugacucaacugga
.....(((.....)))((((.((..(.(((((((.(((((((((.((((.((((((((((((((((((((......)))))))......))))))))))))).)))).))))))))).))))))).)..))))))....

Structure

ggcaaacugaagaagu    g  ag u       u         U    C             ------       cc 
                guug ag  a gaggggu aagagUUCA UCGG UGUCCAGAUGUAu      ccaagua  c
                |||| ||  | ||||||| ||||||||| |||| |||||||||||||      |||||||   
                caac uc  u cucuucg uuUUCAAGU AGUC ACGGGUCUACaua      gguuuau  u
------------aggu    -  ag u       c         U    A             aauaac       ug 

Annotation confidence High

Genome context

chrX: 118190212-118190350 [+]

Mature rno-miR-1298-5p

• Accession: MIMAT0025060
• Description: Rattus norvegicus rno-miR-1298-5p mature miRNA
• Sequence: 41 - UUCAUUCGGCUGUCCAGAUGUA - 62
• Evidence: experimental ; Illumina [1]

Mature rno-miR-1298-3p

• Accession: MIMAT0052042
• Description: Rattus norvegicus rno-miR-1298-3p mature miRNA
• Sequence: 93 - CAUCUGGGCAACUGAUUGAACUU - 115
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22605339
   Limonoid compounds inhibit sphingomyelin biosynthesis by preventing CERT protein-dependent extraction of ceramides from the endoplasmic reticulum
   "Hullin-Matsuda F, Tomishige N, Sakai S, Ishitsuka R, Ishii K, Makino A, Greimel P, Abe M, Laviad EL, Lagarde M, Vidal H, Saito T, Osada H, Hanada K, Futerman AH, Kobayashi T"
   "J Biol Chem (2012) 287:24397-24411


2. PubMed ID: 22908386
   MicroRNAs in the pineal gland: miR-483 regulates melatonin synthesis by targeting arylalkylamine N-acetyltransferase
   "Clokie SJ, Lau P, Kim HH, Coon SL, Klein DC"
   "J Biol Chem (2012) 287:25312-25324