Stem-loop rno-mir-6325

Accession

MI0021849

Description

Rattus norvegicus rno-mir-6325 precursor miRNA

Literature search

2 open access papers mention rno-mir-6325
(4 sentences)

Sequence

1616 reads, 5.0 reads per million, 182 experiments

guaauuguguuuccucuugaacuugcugcugaccuccgcugcugccAAGAGUCUCCGUCUGGCCUUUcaacugaacugAAAGUCAGACAGAGACUCUGCagggaguuccaggccuucauugcuagauggggacugcugaga
......(((((((((((((((...(((...((.((((.((((.....((((((((.(((((((.(((((.......)))))))))))).)))))))))))))))).))..))).)))).....))).)))))).)).....

Structure

guaauu  -      -   -----    cuu   gcu  c    g    ugccA        C       C     ac 
      gu guuucc ucu     ugaa   gcu   ga cucc cugc     AGAGUCUC GUCUGGC UUUca  u
      || |||||| |||     ||||   |||   || |||| ||||     |||||||| ||||||| |||||  g
      cg cagggg aga     acuu   cgg   cu gagg gaCG     UCUCAGAG CAGACUG AAAgu  a
-agagu  u      u   ucguu    --c   -ac  u    -    -----        A       -     ca 

Annotation confidence High

Genome context

chr11: 36729251-36729391 [+]

Mature rno-miR-6325-5p

• Accession: MIMAT0061436
• Description: Rattus norvegicus rno-miR-6325-5p mature miRNA
• Sequence: 47 - AAGAGUCUCCGUCUGGCCUUU - 67
• Evidence: experimental ; Illumina [1]

Mature rno-miR-6325-3p

• Accession: MIMAT0025064
• Description: Rattus norvegicus rno-miR-6325-3p mature miRNA
• Sequence: 79 - AAAGUCAGACAGAGACUCUGC - 99
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22605339
   Limonoid compounds inhibit sphingomyelin biosynthesis by preventing CERT protein-dependent extraction of ceramides from the endoplasmic reticulum
   "Hullin-Matsuda F, Tomishige N, Sakai S, Ishitsuka R, Ishii K, Makino A, Greimel P, Abe M, Laviad EL, Lagarde M, Vidal H, Saito T, Osada H, Hanada K, Futerman AH, Kobayashi T"
   "J Biol Chem (2012) 287:24397-24411


2. PubMed ID: 22908386
   MicroRNAs in the pineal gland: miR-483 regulates melatonin synthesis by targeting arylalkylamine N-acetyltransferase
   "Clokie SJ, Lau P, Kim HH, Coon SL, Klein DC"
   "J Biol Chem (2012) 287:25312-25324