Stem-loop rno-mir-6326

Accession

MI0021850

Description

Rattus norvegicus rno-mir-6326 precursor miRNA

Sequence

5 reads, 2 reads per million, 5 experiments

cugcccuuugagugcugaaggugcuggaguccuuagcagguugccaagaguugcuagugccucCUGGUCUGUAAAGGGACACAGCAcaagugcauuuaggagccucuugcu
..(((((..((((((.....((((((..((((((.((((...((((.(((..((....))))).))))))))..)))))).))))))....))))))))).))........

Structure

------cu  -   uu      ugaag      ga      -a    guu    a   uu  u 
        gc ccu  gagugc     gugcug  guccuu  gcag   gcca gag  gc a
        || |||  ||||||     ||||||  ||||||  ||||   |||| |||  ||  
        cg gga  uuuacg     cACGAC  CAGGGA  UGUC   UGGU cuc  cg g
ucguucuc  a   --      -ugaa      -A      AA    ---    C   --  u 

Annotation confidence Not enough data

Genome context

chr10: 62299339-62299449 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from rno-mir-6326

Mature rno-miR-6326

• Accession: MIMAT0025065
• Description: Rattus norvegicus rno-miR-6326 mature miRNA
• Sequence: 64 - CUGGUCUGUAAAGGGACACAGCA - 86
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22605339
   Limonoid compounds inhibit sphingomyelin biosynthesis by preventing CERT protein-dependent extraction of ceramides from the endoplasmic reticulum
   "Hullin-Matsuda F, Tomishige N, Sakai S, Ishitsuka R, Ishii K, Makino A, Greimel P, Abe M, Laviad EL, Lagarde M, Vidal H, Saito T, Osada H, Hanada K, Futerman AH, Kobayashi T"
   "J Biol Chem (2012) 287:24397-24411


2. PubMed ID: 22908386
   MicroRNAs in the pineal gland: miR-483 regulates melatonin synthesis by targeting arylalkylamine N-acetyltransferase
   "Clokie SJ, Lau P, Kim HH, Coon SL, Klein DC"
   "J Biol Chem (2012) 287:25312-25324