Stem-loop rno-mir-6329

Accession

MI0021853

Description

Rattus norvegicus rno-mir-6329 precursor miRNA

Sequence

19348 reads, 30.0 reads per million, 486 experiments

aaggugacaguuugcAAUGUGACUCAGCUAUCUGAacagucaccccaaugUCAGACAGCUGAGUCACUCUGcaaauugucacccaaugcuu
..((((((((((((((..(((((((((((.(((((.((..........))))))).)))))))))))..))))))))))))))........

Structure

------aa              AU           A     a  guca 
        ggugacaguuugcA  GUGACUCAGCU UCUGA ca    c
        ||||||||||||||  ||||||||||| ||||| ||     
        ccacuguuaaacGU  CACUGAGUCGA AGACU gu    c
uucguaac              CU           C     -  aacc 

Annotation confidence High

Genome context

chr8: 56629595-56629685 [-]

Mature rno-miR-6329-5p

• Accession: MIMAT0025068
• Description: Rattus norvegicus rno-miR-6329-5p mature miRNA
• Sequence: 16 - AAUGUGACUCAGCUAUCUGA - 35
• Evidence: experimental ; Illumina [1]

Mature rno-miR-6329-3p

• Accession: MIMAT0061438
• Description: Rattus norvegicus rno-miR-6329-3p mature miRNA
• Sequence: 51 - UCAGACAGCUGAGUCACUCUG - 71
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22605339
   Limonoid compounds inhibit sphingomyelin biosynthesis by preventing CERT protein-dependent extraction of ceramides from the endoplasmic reticulum
   "Hullin-Matsuda F, Tomishige N, Sakai S, Ishitsuka R, Ishii K, Makino A, Greimel P, Abe M, Laviad EL, Lagarde M, Vidal H, Saito T, Osada H, Hanada K, Futerman AH, Kobayashi T"
   "J Biol Chem (2012) 287:24397-24411


2. PubMed ID: 22908386
   MicroRNAs in the pineal gland: miR-483 regulates melatonin synthesis by targeting arylalkylamine N-acetyltransferase
   "Clokie SJ, Lau P, Kim HH, Coon SL, Klein DC"
   "J Biol Chem (2012) 287:25312-25324