Stem-loop rno-mir-6331

Accession

MI0021855

Description

Rattus norvegicus rno-mir-6331 precursor miRNA

Sequence

274644 reads, 218 reads per million, 425 experiments

cucacaccgacaacuuugagguggcaacagCUUUGGUGGCUUAGUUCUUUGUGCuugguuugggagacacugagacuaacucaccugucuguuguugcuguuaaaucuuaauccagaggaacu
......((.......((((((((((((((((...(((((.(((((.(((.((((((.......))).))).)))))))).))))).....))))))))).....)))))))......))....

Structure

cucaca  gacaacu       -----         --UUU     C     U   U   -   gg 
      cc       uugaggu     ggcaacagC     GGUGG UUAGU CUU GUG Cuu  u
      ||       |||||||     |||||||||     ||||| ||||| ||| ||| |||  u
      gg       aauucua     ucguuguug     ccacu aauca gag cac gag  u
--ucaa  -agaccu       aauug         ucugu     c     -   u   a   gg 

Annotation confidence Medium

Genome context

chr6: 133878578-133878700 [+]

Clustered miRNAs

17 other miRNAs are < 10 kb from rno-mir-6331

Mature rno-miR-6331

• Accession: MIMAT0025070
• Description: Rattus norvegicus rno-miR-6331 mature miRNA
• Sequence: 31 - CUUUGGUGGCUUAGUUCUUUGUGC - 54
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22605339
   Limonoid compounds inhibit sphingomyelin biosynthesis by preventing CERT protein-dependent extraction of ceramides from the endoplasmic reticulum
   "Hullin-Matsuda F, Tomishige N, Sakai S, Ishitsuka R, Ishii K, Makino A, Greimel P, Abe M, Laviad EL, Lagarde M, Vidal H, Saito T, Osada H, Hanada K, Futerman AH, Kobayashi T"
   "J Biol Chem (2012) 287:24397-24411


2. PubMed ID: 22908386
   MicroRNAs in the pineal gland: miR-483 regulates melatonin synthesis by targeting arylalkylamine N-acetyltransferase
   "Clokie SJ, Lau P, Kim HH, Coon SL, Klein DC"
   "J Biol Chem (2012) 287:25312-25324