Stem-loop rno-mir-679

Accession

MI0021857

Description

Rattus norvegicus rno-mir-679 precursor miRNA

Sequence

317 reads, 1.0 reads per million, 89 experiments

gucccuguggugacuugaggcugcucccuguggcuuuGAACUGUGAGGUGACUCUUGGUgugugauggcuuuucagCAAGGUCUUCCUCACAGUAGCcauaaggacacgccagcaacgugacugaagggacaguggu
((((((..(((.(((((.(((((.(((.(((((((....(((((((((.(((.((((.((.............)).)))))))..)))))))))))))))).))))).)))..))).)).)))..))))))......

Structure

------      gu   g  -   -a   -  c   c       uuGA         -U   U    G  uguga 
      gucccu  ggu ac uug  ggc ug ucc uguggcu    ACUGUGAGG  GAC CUUG Ug     u
      ||||||  ||| || |||  ||| || ||| |||||||    |||||||||  ||| |||| ||     g
      caggga  uca ug aac  ccg ac agg auacCGA    UGACACUCC  CUG GAAC ac     g
ugguga      ag   g  c   ga   c  -   a       ----         UU   -    g  uuuuc 

Annotation confidence Medium

Genome context

chr6: 133864564-133864700 [+]

Clustered miRNAs

20 other miRNAs are < 10 kb from rno-mir-679

Mature rno-miR-679-5p

• Accession: MIMAT0052043
• Description: Rattus norvegicus rno-miR-679-5p mature miRNA
• Sequence: 38 - GAACUGUGAGGUGACUCUUGGU - 59
• Evidence: experimental ; Illumina [1]

Mature rno-miR-679-3p

• Accession: MIMAT0025072
• Description: Rattus norvegicus rno-miR-679-3p mature miRNA
• Sequence: 77 - CAAGGUCUUCCUCACAGUAGC - 97
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22605339
   Limonoid compounds inhibit sphingomyelin biosynthesis by preventing CERT protein-dependent extraction of ceramides from the endoplasmic reticulum
   "Hullin-Matsuda F, Tomishige N, Sakai S, Ishitsuka R, Ishii K, Makino A, Greimel P, Abe M, Laviad EL, Lagarde M, Vidal H, Saito T, Osada H, Hanada K, Futerman AH, Kobayashi T"
   "J Biol Chem (2012) 287:24397-24411


2. PubMed ID: 22908386
   MicroRNAs in the pineal gland: miR-483 regulates melatonin synthesis by targeting arylalkylamine N-acetyltransferase
   "Clokie SJ, Lau P, Kim HH, Coon SL, Klein DC"
   "J Biol Chem (2012) 287:25312-25324