Stem-loop rno-mir-6333

Accession

MI0021859

Description

Rattus norvegicus rno-mir-6333 precursor miRNA

Sequence

26 reads, 7 reads per million, 26 experiments

ggaaggaguccaggcugcuuugguccccagguuauggcugcucaccuccaccugccagacaggUAGGCUGGACUUGAACAGCCCGCcuggugucccccgcaggcugcguua
..........(((.((((...((.(.((((((...(((((.(((..((((((((((.....)))))).))))..))).))))).)))))).).))...)))).))).....

Structure

ggaaggaguc   g    uuu  u c      uau     c   cc    -      a 
          cag cugc   gg c ccaggu   ggcug uca  ucca ccugcc g
          ||| ||||   || | ||||||   ||||| |||  |||| |||||| a
          guc gacg   cc g ggucCG   CCGAC AGU  AGGU GGAUgg c
-----auugc   g    ccc  u u      --C     A   UC    C      a 

Annotation confidence Not enough data

Genome context

chr5: 153843901-153844011 [+]

Mature rno-miR-6333

• Accession: MIMAT0025074
• Description: Rattus norvegicus rno-miR-6333 mature miRNA
• Sequence: 64 - UAGGCUGGACUUGAACAGCCCGC - 86
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22605339
   Limonoid compounds inhibit sphingomyelin biosynthesis by preventing CERT protein-dependent extraction of ceramides from the endoplasmic reticulum
   "Hullin-Matsuda F, Tomishige N, Sakai S, Ishitsuka R, Ishii K, Makino A, Greimel P, Abe M, Laviad EL, Lagarde M, Vidal H, Saito T, Osada H, Hanada K, Futerman AH, Kobayashi T"
   "J Biol Chem (2012) 287:24397-24411


2. PubMed ID: 22908386
   MicroRNAs in the pineal gland: miR-483 regulates melatonin synthesis by targeting arylalkylamine N-acetyltransferase
   "Clokie SJ, Lau P, Kim HH, Coon SL, Klein DC"
   "J Biol Chem (2012) 287:25312-25324