miRBase entry: prv-mir-LLT3

Stem-loop prv-mir-LLT3

Accession

MI0022074

Description

Pseudorabies virus prv-mir-LLT3 precursor miRNA

Sequence

ggugagaggcgagccgggggggucgagugggccucgcacuuuacgCGCACACGCCCCUCUCGCGCACcacacaccac
((((.(.((.(.((.(((((((.((.(((.((............)).))).))))))))).)).).)).).))))..

Structure

--    a a  c a  c       u  a   g  cucgc 
  ggug g gg g gc ggggggg cg gug gc     a
  |||| | || | || ||||||| || ||| ||      
  ccac c cC C CG UCUCCCC GC CAC Cg     c
ca    a a  A G  C       -  A   G  cauuu

Annotation confidence Not enough data

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Genome context

NC_006151.1: 98440-98516 [+]

Clustered miRNAs

10 other miRNAs are < 10 kb from prv-mir-LLT3

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature prv-miR-LLT3

Accession	MIMAT0025306
Description	Pseudorabies virus prv-miR-LLT3 mature miRNA
Sequence	46 - CGCACACGCCCCUCUCGCGCAC - 67
Evidence	experimental Illumina [1]

References

PubMed ID: 22292087
Pseudorabies virus infected porcine epithelial cell line generates a diverse set of host microRNAs and a special cluster of viral microRNAs
Wu YQ, Chen DJ, He HB, Chen DS, Chen LL, Chen HC, Liu ZF
PLoS One (2012) 7:e30988