miRBase entry: prv-mir-LLT4

Stem-loop prv-mir-LLT4

Accession

MI0022075

Description

Pseudorabies virus prv-mir-LLT4 precursor miRNA

Sequence

gccgcggccaAGAGUAUCAGCGUGGCUUUUUUguuggucagggugugaaaaaggcacgcugaugcguccgccgcugcag
((.(((((...(((((((((((((.(((((((..............))))))).))))))))))).)).))))).))..

Structure

--  c     caA  -           G       guuggu 
  gc gcggc   GA GUAUCAGCGUG CUUUUUU      c
  || |||||   || ||||||||||| |||||||       
  cg cgccg   cu cguagucgcac gaaaaag      a
ga  u     --c  g           g       uguggg

Annotation confidence Not enough data

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Genome context

NC_006151.1: 98752-98830 [+]

Clustered miRNAs

10 other miRNAs are < 10 kb from prv-mir-LLT4

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature prv-miR-LLT4

Accession	MIMAT0025307
Description	Pseudorabies virus prv-miR-LLT4 mature miRNA
Sequence	11 - AGAGUAUCAGCGUGGCUUUUUU - 32
Evidence	experimental Illumina [1]

References

PubMed ID: 22292087
Pseudorabies virus infected porcine epithelial cell line generates a diverse set of host microRNAs and a special cluster of viral microRNAs
Wu YQ, Chen DJ, He HB, Chen DS, Chen LL, Chen HC, Liu ZF
PLoS One (2012) 7:e30988