miRBase entry: prv-mir-LLT5

Stem-loop prv-mir-LLT5


Accession
MI0022076
Description
Pseudorabies virus prv-mir-LLT5 precursor miRNA


Sequence

ccuguuccccauccuuccacccaugcauucauccgugcggugguggggaUGAGUGGAUGGAUGGAGGCGAGggacgcggu
.((((..(((.((((((((.((((.(((((((((.(((....))).))))))))).)))).)))))).)))))..)))).

Structure
c    uc   a  -      c    g         g   g 
 cugu  ccc uc cuucca ccau cauucaucc ugc g
 ||||  ||| || |||||| |||| ||||||||| |||  
 ggcg  ggG AG GGAGGU GGUA GUGAGUagg gug u
u    ca   -  C      A    G         g   g 


Annotation confidence Not enough data
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Genome context
NC_006151.1: 99861-99940 [+]
Clustered miRNAs
10 other miRNAs are < 10 kb from prv-mir-LLT5
Name Accession Chromosome Start End Strand Confidence




Database links

Mature prv-miR-LLT5

Accession MIMAT0025308
Description Pseudorabies virus prv-miR-LLT5 mature miRNA
Sequence 50 - UGAGUGGAUGGAUGGAGGCGAG - 71
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22292087
    Pseudorabies virus infected porcine epithelial cell line generates a diverse set of host microRNAs and a special cluster of viral microRNAs
    Wu YQ, Chen DJ, He HB, Chen DS, Chen LL, Chen HC, Liu ZF
    PLoS One (2012) 7:e30988