Stem-loop pde-MIR3701

Accession

MI0022116

Description

Pinus densata pde-MIR3701 precursor miRNA

Gene family

MIPF0001553; MIR3701

Literature search

1 open access papers mention pde-MIR3701
(3 sentences)

Sequence

cgccacagaugaaggguuggaguuguucgguagaagaguuucaucuguuguaggauauggaggauuuuccaaaauauuugccaucaaauuaaaagacuauagugguuucauugcaauuuguuuggcacuauccucuauauccuucugcccuaaaauucuucuccUGAACAAUGCCCACCCUUCAUCucugggca
.(((..(((((((((((.((.(((((((((.((((((((((.....((...((((((((((((((...(((((....((((.((.((((((...........)))))).)).))))....)))))....))))))))))))))...))....)))))))))).))))))))).)).)))))))))))...))).

Structure

c   -ac           u  a         u          caucu  ugu              -uuu     auau    c  c      aaag 
 gcc   agaugaagggu gg guuguucgg agaagaguuu     gu   aggauauggaggau    ccaaa    uugc au aaauua    a
 |||   ||||||||||| || ||||||||| ||||||||||     ||   ||||||||||||||    |||||    |||| || ||||||    c
 cgg   uCUACUUCCCA CC UAACAAGUc ucuucuuaaa     cg   uccuauaucuccua    gguuu    aacg ua uuuggu    u
a   guc           C  G         c          -aucc  ucu              ucac     guuu    u  c      gaua 

Annotation confidence Not enough data

Genome context

Unknown

Mature pde-miR3701

• Accession: MIMAT0025352
• Description: Pinus densata pde-miR3701 mature miRNA
• Sequence: 165 - UGAACAAUGCCCACCCUUCAUC - 186
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22480283
   Transcriptome-wide identification and characterization of miRNAs from Pinus densata
   Wan LC, Zhang H, Lu S, Zhang L, Qiu Z, Zhao Y, Zeng QY, Lin J
   BMC Genomics (2012) 13:132