Stem-loop ssc-let-7f-2

Accession

MI0022121

Description

Sus scrofa ssc-let-7f-2 precursor miRNA

Literature search

46 open access papers mention ssc-let-7f-2
(239 sentences)

Sequence

3991 reads, 1058 reads per million, 14 experiments

ucuaucagagUGAGGUAGUAGAUUGUAUAGUUgugggguagugauuuuacccuguucaggagauaaCUAUACAAUCUAUUGCCUUCCcugaggagua
(((.((((.(.((((((((((((((((((((((((((((((.....))))))).........))))))))))))))))))))))).))))))))...

Structure

---   a    a U                       ---------       u 
   ucu ucag g GAGGUAGUAGAUUGUAUAGUUgu         gggguag g
   ||| |||| | |||||||||||||||||||||||         ||||||| a
   agg aguc C UUCCGUUAUCUAACAUAUCaaua         ucccauu u
aug   -    - C                       gaggacuug       u 

Annotation confidence Not enough data

Genome context

chr3: 44864800-44864896 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ssc-let-7f-2

Mature ssc-let-7f-5p

• Accession: MIMAT0002152
• Description: Sus scrofa ssc-let-7f-5p mature miRNA
• Sequence: 11 - UGAGGUAGUAGAUUGUAUAGUU - 32
• Evidence: experimental ; Illumina [1-2]

Mature ssc-let-7f-3p

• Accession: MIMAT0037464
• Description: Sus scrofa ssc-let-7f-3p mature miRNA
• Sequence: 67 - CUAUACAAUCUAUUGCCUUCC - 87
• Evidence: experimental ; Illumina [3]

References

1. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328


2. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100


3. PubMed ID: 25230983
   The characteristics of the porcine (Sus scrofa) liver miRNAome with the use of next generation sequencing
   "Pawlina K, Gurgul A, Oczkowicz M, Bugno-Poniewierska M"
   "J Appl Genet (2015) 56:239-252