Stem-loop ssc-mir-31

Accession

MI0022127

Description

Sus scrofa ssc-mir-31 precursor miRNA

Literature search

40 open access papers mention ssc-mir-31
(88 sentences)

Sequence

713349 reads, 269.0 reads per million, 188 experiments

acuggagaggAGGCAAGAUGCUGGCAUAGCUGuuaaacugagaaccUGCUAUGCCAACAUAUUGCCAUcuuucuuguc
((.(((((((.(((((.(((.(((((((((.(((........)))..))))))))).))).))))).))))))).)).

Structure

-  u       A     G   C         -U   aaa 
 ac ggagagg GGCAA AUG UGGCAUAGC  Guu   c
 || ||||||| ||||| ||| |||||||||  |||    
 ug ucuuucU CCGUU UAC ACCGUAUCG  caa   u
c  u       A     A   A         Uc   gag 

Annotation confidence High

Genome context

chr1: 224397161-224397238 [+]

Mature ssc-miR-31-5p

• Accession: MIMAT0025360
• Description: Sus scrofa ssc-miR-31-5p mature miRNA
• Sequence: 11 - AGGCAAGAUGCUGGCAUAGCUG - 32
• Evidence: experimental ; Illumina [1]

Mature ssc-miR-31-3p

• Accession: MIMAT0052679
• Description: Sus scrofa ssc-miR-31-3p mature miRNA
• Sequence: 47 - UGCUAUGCCAACAUAUUGCCAU - 68
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328