Stem-loop ssc-mir-138

Accession

MI0022131

Description

Sus scrofa ssc-mir-138 precursor miRNA

Literature search

18 open access papers mention ssc-mir-138
(23 sentences)

Sequence

216317 reads, 233.0 reads per million, 176 experiments

gcgguggggcAGCUGGUGUUGUGAAUCAGGCcguugccaaucagagaacgGCUACUUCACAACACCAGGGUcacaccccaccaca
(.(((((((...(((((((((((((...(((((((..(.....)..)))))))..))))))))))))).......))))))).).

Structure

- c       ----cAG             UCA       gc a 
 g ggugggg       CUGGUGUUGUGAA   GGCcguu  c a
 | |||||||       |||||||||||||   |||||||  | u
 c ccacccc       GACCACAACACUU   UCGgcaa  g c
a a       acacUGG             -CA       ga a 

Annotation confidence High

Genome context

chr13: 30329402-30329486 [+]

Mature ssc-miR-138-5p

• Accession: MIMAT0025363
• Description: Sus scrofa ssc-miR-138-5p mature miRNA
• Sequence: 11 - AGCUGGUGUUGUGAAUCAGGC - 31
• Evidence: experimental ; Illumina [1]

Mature ssc-miR-138-3p

• Accession: MIMAT0052682
• Description: Sus scrofa ssc-miR-138-3p mature miRNA
• Sequence: 51 - GCUACUUCACAACACCAGGGU - 71
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328