Stem-loop ssc-mir-150-1

Accession

MI0022133

Description

Sus scrofa ssc-mir-150-1 precursor miRNA

Literature search

10 open access papers mention ssc-mir-150-1
(28 sentences)

Sequence

2362680 reads, 1839.0 reads per million, 196 experiments

cucggcccuaUCUCCCAACCCUUGUACCAGUGcgugccucaguccCUGGUACAGGAAUGGGGGGCAgggaccugggg
(((((((((.(((((((..(((.(((((((.((........))..))))))))))..))))))).)))).)).))).

Structure

-   -  -    a       AC   U       -U  gug 
 cuc gg cccu UCUCCCA  CCU GUACCAG  Gc   c
 ||| || |||| |||||||  ||| |||||||  ||    
 ggg cc gggA GGGGGGU  GGA CAUGGUC  ug   c
g   u  a    C       AA   -       cc  acu 

Annotation confidence High

Genome context

chr6: 50309879-50309955 [-]

Mature ssc-miR-150-5p

• Accession: MIMAT0025365
• Description: Sus scrofa ssc-miR-150-5p mature miRNA
• Sequence: 11 - UCUCCCAACCCUUGUACCAGUG - 32
• Evidence: experimental ; Illumina [1]

Mature ssc-miR-150-3p

• Accession: MIMAT0052684
• Description: Sus scrofa ssc-miR-150-3p mature miRNA
• Sequence: 46 - CUGGUACAGGAAUGGGGGGCA - 66
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328