Stem-loop ssc-mir-182

Accession

MI0022135

Description

Sus scrofa ssc-mir-182 precursor miRNA

Literature search

9 open access papers mention ssc-mir-182
(18 sentences)

Sequence

194 reads, 65 reads per million, 11 experiments

ucgcaccguuUUUGGCAAUGGUAGAACUCACACUggugagauaaugggauccggugguucuagacuugccaacuauggugcgag
(((((((((..(((((((...((((((...((((((..............))))))))))))...)))))))..))))))))).

Structure

-         uU       UGG      UCA      ugagau 
 ucgcaccgu  UUGGCAA   UAGAAC   CACUgg      a
 |||||||||  |||||||   ||||||   ||||||       
 agcguggua  aaccguu   aucuug   guggcc      a
g         uc       cag      ---      uagggu 

Annotation confidence Not enough data

Genome context

chr18: 20035212-20035295 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ssc-mir-182

Mature ssc-miR-182

• Accession: MIMAT0025366
• Description: Sus scrofa ssc-miR-182 mature miRNA
• Sequence: 11 - UUUGGCAAUGGUAGAACUCACACU - 34
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328