Stem-loop ssc-mir-182

Accession

MI0022135

Description

Sus scrofa ssc-mir-182 precursor miRNA

Literature search

25 open access papers mention ssc-mir-182
(43 sentences)

Sequence

1652122 reads, 1202.0 reads per million, 213 experiments

ucgcaccguuUUUGGCAAUGGUAGAACUCACACUggugagauaaugggauccggUGGUUCUAGACUUGCCAACUauggugcgag
(((((((((..(((((((...((((((...((((((..............))))))))))))...)))))))..))))))))).

Structure

-         uU       UGG      UCA      ugagau 
 ucgcaccgu  UUGGCAA   UAGAAC   CACUgg      a
 |||||||||  |||||||   ||||||   ||||||       
 agcguggua  AACCGUU   AUCUUG   GUggcc      a
g         UC       CAG      ---      uagggu 

Annotation confidence High

Genome context

chr18: 20035212-20035295 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ssc-mir-182

Mature ssc-miR-182-5p

• Accession: MIMAT0025366
• Description: Sus scrofa ssc-miR-182-5p mature miRNA
• Sequence: 11 - UUUGGCAAUGGUAGAACUCACACU - 34
• Evidence: experimental ; Illumina [1]

Mature ssc-miR-182-3p

• Accession: MIMAT0052685
• Description: Sus scrofa ssc-miR-182-3p mature miRNA
• Sequence: 55 - UGGUUCUAGACUUGCCAACU - 74
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328