Stem-loop ssc-mir-196a-1

Accession

MI0022138

Description

Sus scrofa ssc-mir-196a-1 precursor miRNA

Literature search

16 open access papers mention ssc-mir-196a-1
(104 sentences)

Sequence

276847 reads, 125.0 reads per million, 136 experiments

cugagugaauUAGGUAGUUUCAUGUUGUUGGGccuggauuucugaacaCAACGACAUUAAACCACCCGAcucacggcagu
(((.((((.((.(((.((((.((((((((((..(.........)..).))))))))).)))).))).)).))))..))).

Structure

-   -a    a  A   A    C         - Gc ugg 
 cug  guga uU GGU GUUU AUGUUGUUG G  c   a
 |||  |||| || ||| |||| ||||||||| |  |   u
 gac  cacu AG CCA CAAA UACAGCAAC c  g   u
u   gg    c  C   C    U         a aa ucu 

Annotation confidence High

Genome context

chr12: 24836774-24836853 [+]

Mature ssc-miR-196a-5p

• Accession: MIMAT0002163
• Description: Sus scrofa ssc-miR-196a-5p mature miRNA
• Sequence: 11 - UAGGUAGUUUCAUGUUGUUGGG - 32
• Evidence: experimental ; Illumina [1]

Mature ssc-miR-196a-1-3p

• Accession: MIMAT0052584
• Description: Sus scrofa ssc-miR-196a-1-3p mature miRNA
• Sequence: 49 - CAACGACAUUAAACCACCCGA - 69
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328