Stem-loop ssc-mir-196b-2

Accession

MI0022139

Description

Sus scrofa ssc-mir-196b-2 precursor miRNA

Literature search

14 open access papers mention ssc-mir-196b-2
(31 sentences)

Sequence

449913 reads, 205.0 reads per million, 165 experiments

gucggugauuUAGGUAGUUUCCUGUUGUUGGGauccaccuuucucUCGACAGCACGACACUGCCUUcauuacuucagu
...((((((..(((((((.((.(((((((((((..........))))))))))).)).)))))))..)))))).....

Structure

--guc      uU       U  C           ucca 
     ggugau  AGGUAGU UC UGUUGUUGGGa    c
     ||||||  ||||||| || |||||||||||     
     ucauua  UCCGUCA AG ACGACAGCUcu    c
ugacu      cU       C  C           cuuu 

Annotation confidence High

Genome context

chr18: 50037507-50037584 [+]

Mature ssc-miR-196b-5p

• Accession: MIMAT0013923
• Description: Sus scrofa ssc-miR-196b-5p mature miRNA
• Sequence: 11 - UAGGUAGUUUCCUGUUGUUGGG - 32
• Evidence: experimental ; Illumina [1]

Mature ssc-miR-196b-3p

• Accession: MIMAT0017379
• Description: Sus scrofa ssc-miR-196b-3p mature miRNA
• Sequence: 46 - UCGACAGCACGACACUGCCUU - 66
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328


2. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100