Stem-loop ssc-mir-489

Accession

MI0022150

Description

Sus scrofa ssc-mir-489 precursor miRNA

Literature search

6 open access papers mention ssc-mir-489
(14 sentences)

Sequence

12249 reads, 52.0 reads per million, 75 experiments

uggcagcuugguGGUCGUAUGUGUGGCGCCAUCUAcuugagcgguuaggAGUGACAUCACAUAUACGGCGGcuaaacugcu
.(((((.(((((.(((((((((((((.(.((.((.(((((....))))))))).).))))))))))))).))))).)))))

Structure

u     c     G             C C  U  A     g 
 ggcag uuggu GUCGUAUGUGUGG G CA CU cuuga c
 ||||| ||||| ||||||||||||| | || || |||||  
 ucguc aaucG CGGCAUAUACACU C GU GA ggauu g
-     a     G             A A  -  -     g 

Annotation confidence High

Genome context

chr9: 80161824-80161904 [-]

Mature ssc-miR-489-5p

• Accession: MIMAT0052690
• Description: Sus scrofa ssc-miR-489-5p mature miRNA
• Sequence: 13 - GGUCGUAUGUGUGGCGCCAUCUA - 35
• Evidence: experimental ; Illumina [1]

Mature ssc-miR-489-3p

• Accession: MIMAT0025375
• Description: Sus scrofa ssc-miR-489-3p mature miRNA
• Sequence: 50 - AGUGACAUCACAUAUACGGCGG - 71
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328