Stem-loop ssc-mir-551a

Accession

MI0022153

Description

Sus scrofa ssc-mir-551a precursor miRNA

Literature search

2 open access papers mention ssc-mir-551a
(3 sentences)

Sequence

4926 reads, 6.0 reads per million, 137 experiments

uggugacccugGAAAUCCAGAGCGGGUGAGGCCUgucugacuguuucuagGCGACCCACUCUUGGUUUCCaugguugccc
.(((((((.((((((((.((((.((((...(((((............))))).)))).)))).)))))))).))))))).

Structure

u       c        C    C    GAG     ucuga 
 ggugacc ugGAAAUC AGAG GGGU   GCCUg     c
 ||||||| |||||||| |||| ||||   |||||      
 ccguugg aCCUUUGG UCUC CCCA   CGgau     u
c       u        U    A    --G     cuuug 

Annotation confidence High

Genome context

chr6: 59927697-59927776 [+]

Mature ssc-miR-551a-5p

• Accession: MIMAT0052691
• Description: Sus scrofa ssc-miR-551a-5p mature miRNA
• Sequence: 12 - GAAAUCCAGAGCGGGUGAGGCCU - 34
• Evidence: experimental ; Illumina [1]

Mature ssc-miR-551a-3p

• Accession: MIMAT0025379
• Description: Sus scrofa ssc-miR-551a-3p mature miRNA
• Sequence: 51 - GCGACCCACUCUUGGUUUCC - 70
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328