Stem-loop ssc-mir-582

Accession

MI0022154

Description

Sus scrofa ssc-mir-582 precursor miRNA

Literature search

3 open access papers mention ssc-mir-582
(6 sentences)

Sequence

78258 reads, 67.0 reads per million, 210 experiments

cucuuuggUUACAGUUGUUCAACCAGUUACUaaucuaacuaacugUAACCGGUUGAACAACUGAACCCaaagggugc
((((((((...(((((((((((((.(((((..............))))).)))))))))))))...))))))))...

Structure

---        UUA             A     Uaaucu 
   cucuuugg   CAGUUGUUCAACC GUUAC      a
   ||||||||   ||||||||||||| |||||       
   gggaaaCC   GUCAACAAGUUGG CAAUg      a
cgu        CAA             C     ucaauc 

Annotation confidence High

Genome context

chr16: 41335754-41335830 [+]

Mature ssc-miR-582-5p

• Accession: MIMAT0037466
• Description: Sus scrofa ssc-miR-582-5p mature miRNA
• Sequence: 9 - UUACAGUUGUUCAACCAGUUACU - 31
• Evidence: experimental ; Illumina [2]

Mature ssc-miR-582-3p

• Accession: MIMAT0025380
• Description: Sus scrofa ssc-miR-582-3p mature miRNA
• Sequence: 46 - UAACCGGUUGAACAACUGAACCC - 68
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328


2. PubMed ID: 25230983
   The characteristics of the porcine (Sus scrofa) liver miRNAome with the use of next generation sequencing
   "Pawlina K, Gurgul A, Oczkowicz M, Bugno-Poniewierska M"
   "J Appl Genet (2015) 56:239-252