Stem-loop ssc-mir-874

Accession

MI0022157

Description

Sus scrofa ssc-mir-874 precursor miRNA

Literature search

5 open access papers mention ssc-mir-874
(15 sentences)

Sequence

178631 reads, 181.0 reads per million, 207 experiments

ugguguuagcccugCGGCCCCACGCACCAGGGUAAGagagacucucgcuucCUGCCCUGGCCCGAGGGACCGACuggcugggcc
.(((..(((((...(((.(((.((..((((((((((.(((...))).))...))))))))..)).))).)))...))))).)))

Structure

u   gu     cug   C   A  CA        ---  a   a 
 ggu  uagcc   CGG CCC CG  CCAGGGUA   AG gag  
 |||  |||||   ||| ||| ||  ||||||||   || ||| c
 ccg  gucgg   GCC GGG GC  GGUCCCGU   uc cuc  
-   -g     uCA   A   A  CC        Ccu  g   u 

Annotation confidence High

Genome context

chr2: 145381098-145381181 [-]

Mature ssc-miR-874-5p

• Accession: MIMAT0052692
• Description: Sus scrofa ssc-miR-874-5p mature miRNA
• Sequence: 15 - CGGCCCCACGCACCAGGGUAAG - 36
• Evidence: experimental ; Illumina [1]

Mature ssc-miR-874-3p

• Accession: MIMAT0025384
• Description: Sus scrofa ssc-miR-874-3p mature miRNA
• Sequence: 52 - CUGCCCUGGCCCGAGGGACCGAC - 74
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328