Stem-loop ssc-mir-1249-1

Accession

MI0022158

Description

Sus scrofa ssc-mir-1249-1 precursor miRNA

Literature search

2 open access papers mention ssc-mir-1249-1
(2 sentences)

Sequence

95296 reads, 82.0 reads per million, 202 experiments

uguuugcauggggAGGAGGGAGGAGAUGGGCCAAGUUCccucugccuggaACGCCCUUCCCCCCCUUCUUCAccuagcgaac
.((((((..(((((((((((.((.((.((((...(((((........))))))))).)).))))))))))).))..))))))

Structure

u      au  -         A  A  U    CAA     cuc 
 guuugc  gg ggAGGAGGG GG GA GGGC   GUUCc   u
 ||||||  || ||||||||| || || ||||   |||||    
 caagcg  cc CUUCUUCCC CC CU CCCG   CAagg   g
-      au  A         -  C  U    ---     ucc 

Annotation confidence High

Genome context

chr5: 1499712-1499793 [+]

Mature ssc-miR-1249-5p

• Accession: MIMAT0052693
• Description: Sus scrofa ssc-miR-1249-5p mature miRNA
• Sequence: 14 - AGGAGGGAGGAGAUGGGCCAAGUUC - 38
• Evidence: experimental ; Illumina [1]

Mature ssc-miR-1249-3p

• Accession: MIMAT0025385
• Description: Sus scrofa ssc-miR-1249-3p mature miRNA
• Sequence: 51 - ACGCCCUUCCCCCCCUUCUUCA - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328