Stem-loop ssc-mir-2411

Accession

MI0022164

Description

Sus scrofa ssc-mir-2411 precursor miRNA

Literature search

3 open access papers mention ssc-mir-2411
(10 sentences)

Sequence

25161 reads, 23.0 reads per million, 200 experiments

agaggcaaugUGGAGUGACUGUCAGAUGCAGCcaucagaauaggugauuuggcUGAACUGUCAUACUCCCACAUCcuccacca
.((((..((((((((((..((.(((.(.(((((((((.......)))..))))))).))).)))))).)))))))))).....

Structure

----a    ca      -    AC  U   A G      --   ga 
     gagg  augUGG AGUG  UG CAG U CAGCca  uca  a
     ||||  |||||| ||||  || ||| | ||||||  |||  u
     cucC  UACACC UCAU  AC GUC A GUcggu  agu  a
accac    --      C    --  U   A -      uu   gg 

Annotation confidence High

Genome context

chr4: 104285506-104285588 [-]

Mature ssc-miR-2411-5p

• Accession: MIMAT0025389
• Description: Sus scrofa ssc-miR-2411-5p mature miRNA
• Sequence: 11 - UGGAGUGACUGUCAGAUGCAGC - 32
• Evidence: experimental ; Illumina [1]

Mature ssc-miR-2411-3p

• Accession: MIMAT0052696
• Description: Sus scrofa ssc-miR-2411-3p mature miRNA
• Sequence: 54 - UGAACUGUCAUACUCCCACAUC - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328