miRBase entry: htu-MIR171c

Stem-loop htu-MIR171c


Accession
MI0022248
Description
Helianthus tuberosus htu-MIR171c precursor miRNA


Sequence

ugagagggagcuguugaacgagauguugguucgguucaauaagaacucaacguucaaauggugcauugaacguugcuuuuUGAUUGAGCCGUGCCAAUAUCacgugcauguugcu
.....((.((((((...(((.(((((((((.(((((((((.((((..((((((((((........))))))))))..)))).))))))))).))))))))).)))))).))).))

Structure
ugaga  g   -   uga   a         u         a    cu          aug 
     gg agc ugu   acg gauguuggu cgguucaau agaa  caacguucaa   g
     || ||| |||   ||| ||||||||| ||||||||| ||||  ||||||||||    
     uc uug acg   ugc CUAUAACCG GCCGAGUUA Uuuu  guugcaaguu   u
-----  g   u   ---   a         U         G    uc          acg 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature htu-miR171c

Accession MIMAT0025508
Description Helianthus tuberosus htu-miR171c mature miRNA
Sequence 81 - UGAUUGAGCCGUGCCAAUAUC - 101
Evidence not_experimental

References

  1. PubMed ID: 21670966
    Identification of MicroRNAs and their targets in Helianthus
    "Barozai MY, Baloch IA, Din M"
    "Mol Biol Rep (2012) 39:2523-2532