Stem-loop bta-mir-6517

Accession

MI0022268

Description

Bos taurus bta-mir-6517 precursor miRNA

Literature search

2 open access papers mention bta-mir-6517
(4 sentences)

Sequence

118257 reads, 32.0 reads per million, 314 experiments

ccgccgguucUCAGGGUCCGUGAGCUCCUCGGCguacucggagaacauucgCCGGAACUCCGGGUCCUGGAAggcgga
(((((..(((.(((((((((.(((.(((..((((...............))))))).)))))))))))))))))))).

Structure

-     gg   U         U   C   UC    uacucg 
 ccgcc  uuc CAGGGUCCG GAG UCC  GGCg      g
 |||||  ||| ||||||||| ||| |||  ||||      a
 ggcgg  AAG GUCCUGGGC CUC AGG  CCgc      g
a     --   -         -   A   --    uuacaa 

Annotation confidence High

Genome context

10: 42671051-42671128 [+]

Mature bta-miR-6517-5p

• Accession: MIMAT0025528
• Description: Bos taurus bta-miR-6517-5p mature miRNA
• Sequence: 11 - UCAGGGUCCGUGAGCUCCUCGGC - 33
• Evidence: experimental ; Illumina [1]

Mature bta-miR-6517-3p

• Accession: MIMAT0050982
• Description: Bos taurus bta-miR-6517-3p mature miRNA
• Sequence: 52 - CCGGAACUCCGGGUCCUGGAA - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21912509
   Solexa sequencing of novel and differentially expressed microRNAs in testicular and ovarian tissues in Holstein cattle
   "Huang J, Ju Z, Li Q, Hou Q, Wang C, Li J, Li R, Wang L, Sun T, Hang S, Gao Y, Hou M, Zhong J"
   "Int J Biol Sci (2011) 7:1016-1026