Stem-loop bta-mir-154c

Accession

MI0022289

Description

Bos taurus bta-mir-154c precursor miRNA

Literature search

11 open access papers mention bta-mir-154c
(67 sentences)

Sequence

539729 reads, 333.0 reads per million, 311 experiments

uucgaaaggAGGUUGUCCGUGAUGUAUUUGCUuuauuuguggcAGAUAUUGCACGGUUGAUCUCUUuucuucauc
...(((((((((((..(((((..(((((((((........)))))))))..)))))..)))))))))))......

Structure

---uuc           GU     AU         uua 
      gaaaggAGGUU  CCGUG  GUAUUUGCU   u
      |||||||||||  |||||  |||||||||    
      cuuUUCUCUAG  GGCAC  UAUAGAcgg   u
cuacuu           UU     GU         ugu 

Annotation confidence High

Genome context

21: 65925890-65925964 [+]

Clustered miRNAs

20 other miRNAs are < 10 kb from bta-mir-154c

Mature bta-miR-154c-5p

• Accession: MIMAT0061050
• Description: Bos taurus bta-miR-154c-5p mature miRNA
• Sequence: 10 - AGGUUGUCCGUGAUGUAUUUGCU - 32
• Evidence: experimental ; Illumina [1]

Mature bta-miR-154c-3p

• Accession: MIMAT0025542
• Description: Bos taurus bta-miR-154c-3p mature miRNA
• Sequence: 44 - AGAUAUUGCACGGUUGAUCUCUU - 66
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21912509
   Solexa sequencing of novel and differentially expressed microRNAs in testicular and ovarian tissues in Holstein cattle
   "Huang J, Ju Z, Li Q, Hou Q, Wang C, Li J, Li R, Wang L, Sun T, Hang S, Gao Y, Hou M, Zhong J"
   "Int J Biol Sci (2011) 7:1016-1026