Stem-loop bta-mir-154b

Accession

MI0022293

Description

Bos taurus bta-mir-154b precursor miRNA

Literature search

11 open access papers mention bta-mir-154b
(52 sentences)

Sequence

74433 reads, 39.0 reads per million, 299 experiments

guacuugaagAGAGGUCUUCCAUGGUGCAUUCGcuuuauucuuugacgAAUCAUACAUGGUUGACCUUUUUUuagguauca
(((((((((((((((((..((((((((.((((((..........).)))))))).)))))..)))))))))))))))))..

Structure

--                 UU     -   C     - uuua 
  guacuugaagAGAGGUC  CCAUG GUG AUUCG c    u
  |||||||||||||||||  ||||| ||| ||||| |     
  uauggauUUUUUUCCAG  GGUAC UAC UAAgc g    u
ac                 UU     A   -     a uuuc 

Annotation confidence High

Genome context

21: 65949004-65949084 [+]

Clustered miRNAs

20 other miRNAs are < 10 kb from bta-mir-154b

Mature bta-miR-154b-5p

• Accession: MIMAT0025547
• Description: Bos taurus bta-miR-154b-5p mature miRNA
• Sequence: 11 - AGAGGUCUUCCAUGGUGCAUUCG - 33
• Evidence: experimental ; Illumina [1]

Mature bta-miR-154b-3p

• Accession: MIMAT0061053
• Description: Bos taurus bta-miR-154b-3p mature miRNA
• Sequence: 49 - AAUCAUACAUGGUUGACCUUUUUU - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21912509
   Solexa sequencing of novel and differentially expressed microRNAs in testicular and ovarian tissues in Holstein cattle
   "Huang J, Ju Z, Li Q, Hou Q, Wang C, Li J, Li R, Wang L, Sun T, Hang S, Gao Y, Hou M, Zhong J"
   "Int J Biol Sci (2011) 7:1016-1026