Stem-loop bta-mir-6536-1

Accession

MI0022342

Description

Bos taurus bta-mir-6536-1 precursor miRNA

Literature search

2 open access papers mention bta-mir-6536-1
(2 sentences)

Sequence

10752 reads, 3.0 reads per million, 235 experiments

auugaccaacUUUAAGUAUACGAUGAACUGCAgcaugccaggcuucccUGCAGUUCAUCGUAUACUUAAAguuggucaguu
(((((((((((((((((((((((((((((((((...((...))....))))))))))))))))))))))))))))))))).

Structure

-                                 -cau  c 
 auugaccaacUUUAAGUAUACGAUGAACUGCAg    gc  
 |||||||||||||||||||||||||||||||||    || a
 ugacugguugAAAUUCAUAUGCUACUUGACGUc    cg  
u                                 ccuu  g 

Annotation confidence High

Genome context

9: 38958095-38958175 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bta-mir-6536-1

Mature bta-miR-6536-5p

• Accession: MIMAT0025572
• Description: Bos taurus bta-miR-6536-5p mature miRNA
• Sequence: 11 - UUUAAGUAUACGAUGAACUGCA - 32
• Evidence: experimental ; Illumina [1]

Mature bta-miR-6536-3p

• Accession: MIMAT0051032
• Description: Bos taurus bta-miR-6536-3p mature miRNA
• Sequence: 49 - UGCAGUUCAUCGUAUACUUAAA - 70
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21912509
   Solexa sequencing of novel and differentially expressed microRNAs in testicular and ovarian tissues in Holstein cattle
   "Huang J, Ju Z, Li Q, Hou Q, Wang C, Li J, Li R, Wang L, Sun T, Hang S, Gao Y, Hou M, Zhong J"
   "Int J Biol Sci (2011) 7:1016-1026