Stem-loop mmu-mir-6540

Accession

MI0022356

Symbol

MGI: Mir6540

Description

Mus musculus mmu-mir-6540 precursor miRNA

Sequence

4031 reads, 18 reads per million, 54 experiments

ggaauaacugggcaaaggcucucCUAAGGCAGGCAGACUUCAGUGuugcccauuucucaguucUCUGAAGCUUGCUUACCUCCAaagggccuuugccauagcccugua
.......(((((((((((((((....(((.((((((.((((((.(..((..........)).).)))))).)))))).)))....)))))))))))).))).......

Structure

ggaauaa   -            cCUA   C      A      U uu  ccau 
       cug ggcaaaggcucu    AGG AGGCAG CUUCAG G  gc    u
       ||| ||||||||||||    ||| |||||| |||||| |  ||     
       gau ccguuuccggga    UCC UUCGUU GAAGUC c  ug    u
auguccc   a            aACC   A      C      U -u  acuc 

Annotation confidence High

Genome context

chr16: 42303362-42303469 [-]

Mature mmu-miR-6540-5p

• Accession: MIMAT0025585
• Description: Mus musculus mmu-miR-6540-5p mature miRNA
• Sequence: 24 - CUAAGGCAGGCAGACUUCAGUG - 45
• Evidence: experimental ; Illumina [1]

Mature mmu-miR-6540-3p

• Accession: MIMAT0025586
• Description: Mus musculus mmu-miR-6540-3p mature miRNA
• Sequence: 64 - UCUGAAGCUUGCUUACCUCCA - 84
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20605486
   Regulation of microRNA expression and abundance during lymphopoiesis
   "Kuchen S, Resch W, Yamane A, Kuo N, Li Z, Chakraborty T, Wei L, Laurence A, Yasuda T, Peng S, Hu-Li J, Lu K, Dubois W, Kitamura Y, Charles N, Sun HW, Muljo S, Schwartzberg PL, Paul WE, O'Shea J, Rajewsky K, Casellas R"
   "Immunity (2010) 32:828-839